Showing : ensemble mart • reset
6
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1.6k
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biomart R code cannot retrieve gene symbol
biomart ensemblbiomart ensemble mart
6.7 years ago emmak ▴ 20
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1.2k
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News: Ensembl 87 is out!
ensembl ensemble mart ensembl mart biomart News
8.0 years ago amonida ▴ 20
0
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2
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1.2k
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ENSEMBL_MART_FUNCGEN not accessible through biomaRt?
biomart regulatory ensemble mart ensembldb
updated 8.5 years ago by ▴ 800 • written 8.5 years ago by ▴ 50
3
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3
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1.7k
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Premature EOF within Description Field - Bos Taurus
biomart ensemble mart
updated 8.6 years ago by 25k • written 8.6 years ago by ▴ 370
0
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1.3k
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Low yield mapping ensembl transcript ids to entrez gene ids in biomart
biomart ensembl ensemble mart entrez gene identifiers
8.8 years ago serpalma.v ▴ 60
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1.8k
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News: Ensembl 83 is out!
ensemble mart ensembl biomart ensembl release News
9.0 years ago amonida ▴ 20
1
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3
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2.6k
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getSequence from biomaRt but Error in martCheck
R biomart ensemble mart
updated 9.0 years ago by 16k • written 9.0 years ago by • 0
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Answer: Epic v2 Annotation CpG_maf source? by James W. MacDonald 67k
Those all come from dbSNP by way of UCSC. [See here][1], particularly lines 114 and onward. Here is no MAF for a CpG. The MAF is for the…
Comment: Deseq2 res Function by James W. MacDonald 67k
In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…
Answer: Struggle with the replicates of epic array data by James W. MacDonald 67k
You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …
Comment: Identifying potentially associated gene set to drug response using GSVA by Robert Castelo ★ 3.4k
So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…
Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Votes
Appropriate use of the function treat of the limma package
Comment: Is it recommended to analyze different tissues together when using edgeR
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
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