Bioconductor Ensemble mart

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biomart ensemblbiomart ensemble mart

6.8 years ago emmak ▴ 20

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ensembl ensemble mart ensembl mart biomart News

8.1 years ago amonida ▴ 20

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biomart regulatory ensemble mart ensembldb

updated 8.6 years ago by Thomas Maurel ▴ 800 • written 8.6 years ago by Sigve Nakken ▴ 50

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biomart ensemble mart

updated 8.8 years ago by Martin Morgan 25k • written 8.8 years ago by andrew.j.skelton73 ▴ 370

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biomart ensembl ensemble mart entrez gene identifiers

9.0 years ago serpalma.v ▴ 60

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ensemble mart ensembl biomart ensembl release News

9.1 years ago amonida ▴ 20

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R biomart ensemble mart

updated 9.2 years ago by Hervé Pagès 16k • written 9.2 years ago by Gabriela Santos • 0

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Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mec25 • 0

I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Votes

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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